Key Publications

  1. de Souza Pinto Lemgruber, RenatoValgepea, KasparTappel, RyanBehrendorff, James BPalfreyman, Robin WilliamPlan, Manuel, Hodson, Mark PSimpson, Séan DennisNielsen, Lars KKöpke, Michael and Marcellin, Esteban (2019)Systems-level engineering and characterization of Clostridium autoethanogenum through heterologous production of poly-3-hydroxybutyrate (PHB)Metabolic engineering53 14-23. doi:10.1016/j.ymben.2019.01.003
  2. Sharma Khanal, Bal KumariBudiman, ChrysantheaHodson, Mark P.Plan, Manuel R.R.Prakash, SangeetaBhandari, Bhesh and Bansal, Nidhi (2019)Physico-chemical and biochemical properties of low fat Cheddar cheese made from micron to nano sized milk fat emulsionsJournal of Food Engineering242 94-105. doi:10.1016/j.jfoodeng.2018.08.019
  3. Dugdale, BenjaminKato, MaikoDeo, Pradeep, Plan, ManuelHarrison, MarkLloyd, RobynWalsh, TerryHarding, Robert and Dale, James(2018)Production of human vitronectin in Nicotiana benthamiana using the INPACT hyperexpression platformPlant Biotechnology Journal16 2: 394-403. doi:10.1111/pbi.12779
  4. Ward, Micheal S..Flemming, Nicole B.Gallo, Linda A.Fotheringham, Amelia K.McCarthy, Domenica A.Zhuang, AowenTang, Peter H.Borg, Danielle J.Shaw, HannahHarvie, BenjaminBriskey, David R.Roberts, Llion A.Plan, Manuel R.Murphy, Michael P.Hodson, Mark P. and Forbes, Josephine M. (2017)Targeted mitochondrial therapy using MitoQ shows equivalent renoprotection to angiotensin converting enzyme inhibition but no combined synergy in diabetesScientific Reports7 1: 15190. doi:10.1038/s41598-017-15589-x
  5. Yu, ShiqinLai, BinPlan, Manuel RHodson, Mark PLestari, Endah ASong, Hao and Krömer, Jens O (2017)Improved performance of Pseudomonas putida in a bioelectrochemical system through overexpression of periplasmic glucose dehydrogenaseBiotechnology and bioengineering115 1: 145-155. doi:10.1002/bit.26433
  6. Zhuang, AowenYap, Felicia Y. T.Bruce, ClintonLeung, ChrisPlan, Manuel R.Sullivan, Mitchell A.Herath, ChandanaMcCarthy, DomenicaSourris, Karly C.Kantharidis, PhillipCoughlan, Melinda T.Febbraio, Mark A. Hodson, Mark P.Watt, Matthew J.Angus, PeterSchulz, Benjamin L. and Forbes, Josephine M. (2017)Increased liver AGEs induce hepatic injury mediated through an OST48 pathwayScientific Reports7 1: 12292. doi:10.1038/s41598-017-12548-4
  7. Gonzalez-Garcia, Ricardo AxayacatlMcCubbin, TimWille, AnnalenaPlan, Manuel, Nielsen, Lars Keld and Marcellin, Esteban (2017)Awakening sleeping beauty: production of propionic acid in Escherichia coli through the sbm operon requires the activity of a methylmalonyl-CoA epimeraseMicrobial Cell Factories16 1: 121. doi:10.1186/s12934-017-0735-4
  8. Valgepea, KasparLoi, Kim Q.Behrendorff, James B.Lemgruber, Renato de S. P.Plan, ManuelHodson, Mark P.Koepke, MichaelNielsen, Lars K. and Marcellin, Esteban (2017)Arginine deiminase pathway provides ATP and boosts growth of the gas-fermenting acetogen Clostridium autoethanogenumMetabolic Engineering41 202-211. doi:10.1016/j.ymben.2017.04.007
  9. Peng, Bingyin, Plan, Manuel R.Carpenter, AlexanderNielsen, Lars K.and Vickers, Claudia E. (2017)Coupling gene regulatory patterns to bioprocess conditions to optimize synthetic metabolic modules for improved sesquiterpene production in yeastBiotechnology for Biofuels10 1: 43. doi:10.1186/s13068-017-0728-x
  10. Peng, BingyinPlan, Manuel R.Chrysanthopoulos, PanagiotisHodson, Mark P.Nielsen, Lars K. and Vickers, Claudia E. (2017)A squalene synthase protein degradation method for improved sesquiterpene production in Saccharomyces cerevisiaeMetabolic Engineering39 209-219. doi:10.1016/j.ymben.2016.12.003
  11. Lai, BinPlan, Manuel R. Averesch, Nils J. H. Yu, ShiqinKracke, FraukeLekieffre, NicolasBydder, SarahHodson, Mark P. Winter, Gal and Kroemer, Jens O. (2017)Quantitative analysis of aromatics for synthetic biology using liquid chromatographyBiotechnology Journal12 1: 1600269. doi:10.1002/biot.201600269
  12. Yu, Shiqin, Plan, Manuel R.Winter, Gal and Krömer, Jens O. (2016)Metabolic engineering of pseudomonas putida KT2440 for the production of para-hydroxy benzoic acidFrontiers in Bioengineering and Biotechnology4 1-10. doi:10.3389/fbioe.2016.00090
  13. de Oliveira Dal'Molin, Cristiana GomesOrellana, CamilaGebbie, LeighSteen, JenniferHodson, Mark, Plan, ManuelChrysanthopoulos, PanagiotisMacqualter, RichardPalfreyman, Robin W. and Nielsen, Lars K. (2016)Metabolic reconstruction of Setaria italica: a systems biology approach for integrating tissue-specific omics and pathway analysis of bioenergy grassesFrontiers in Plant Science7 1138: 1-18. doi:10.3389/fpls.2016.01138
  14. Williams, T. C.Averesch, N. J. H.Winter, G.Plan, M. R.Vickers, C. E.Nielsen, L. K. and Kromer, J. O. (2015)Quorum-sensing linked RNA interference for dynamic metabolic pathway control in Saccharomyces cerevisiaeMetabolic Engineering29 124-134. doi:10.1016/j.ymben.2015.03.008
  15. McQualter, Richard B.Bellasio, ChandraGebbie, Leigh K.Petrasovits, Lars A.Palfreyman, Robin W.Hodson, Mark P., Plan, Manuel R.Blackman, Deborah M.Brumbley, Stevens M. and Nielsen, Lars K.(2015)Systems biology and metabolic modelling unveils limitations to polyhydroxybutyrate accumulation in sugarcane leaves; lessons for C4 engineeringPlant Biotechnology Journal14 2: 1-14. doi:10.1111/pbi.12399
  16. McQualter, Richard B.Petrasovits, Lars A.Gebbie, Leigh K.Schweitzer, DirkBlackman, Deborah M.Chrysanthopoulos, PanagiotisHodson, Mark P.Plan, Manuel R.Riches, James D.Snell, Kristi D.Brumbley, Stevens M. and Nielsen, Lars K. (2014)The use of an acetoacetyl-CoA synthase in place of a β-ketothiolase enhances poly-3-hydroxybutyrate production in sugarcane mesophyll cellsPlant Biotechnology Journal13 5: 700-707. doi:10.1111/pbi.12298
  17. Chacko, AnuBarker, Christopher J.Beagley, Kenneth W.Hodson, Mark P., Plan, Manuel R.Timms, Peter and Huston, Wilhelmina M. (2014)Increased sensitivity to tryptophan bioavailability is a positive adaptation by the human strains of Chlamydia pneumoniaeMolecular Microbiology93 4: 797-813. doi:10.1111/mmi.12701
  18. Plan, Manuel R. ReySaska, IvanaCagauan, Arsenia and Craik, David J.(2008)Backbone cyclised peptides from plants show molluscicidal activity against the rice pest pomacaea canaliculata (golden apple snail)Journal of Agricultural and Food Chemistry56 13: 5237-5241. doi:10.1021/jf800302f
  19. Plan, M. R. RGoransson, UClark, R. JDaly, N. LColgrave, M. L and Craik, D.J (2007)The cyclotide fingerprint in Oldenlandia affinis: Elucidation of chemically modified, linear and novel macrocyclic peptidesChembiochem8 9: 1001-1011. doi:10.1002/cbic.200700097
  20. Daly, N. L.Clark, R. J., Plan, M. R. and Craik, D. J. (2006)Kalata B8, a novel antiviral circular protein, exhibits conformational flexibility in the cystine knot motifBiochemical Journal393 Part 3: 619-626. doi:10.1042/BJ20051371
  21. Jennings, Cameron V.Rosengren, K. JohanDaly, Norelle L., Plan, ManuelStevens, JackieScanlon, Martin J.Waine, ClementNorman, David G.Anderson, Marilyn A. and Craik, David J. (2005)Isolation, solution structure, and insecticidal activity of Kalata B2, a circular protein with a twist: Do Mobius strips exist in nature?Biochemistry44 3: 851-860. doi:10.1021/bi047837h
  22. Craik, D. J.Daly, N. L.Mulvenna, J.Plan, M. R. and Trabi, M. (2004)Discovery, structure and biological activities of the cyclotidesCurrent Protein & Peptide Science5 5: 297-315. doi:10.2174/1389203043379512
  23. Rosengren, K. J.Daly, N. L., Plan, M. R.Waine, C. and Craik, D. J. (2003)Twists, knots, and rings in proteins: Structural definition of the cyclotide frameworkJournal of Biological Chemistry278 10: 8606-8616. doi:10.1074/jbc.M211147200
  24. Craik, D. J.Daly, N. L., Plan, M. R., Salim, A. A. and Sando, L. (2002)Structure and function of plant toxins (with emphasis on cystine knot toxins)Journal of Toxicology-toxin Reviews21 3: 229-271. doi:10.1081/TXR-120014405
  25. Plan, M. R. R.Joyce, D. C.Ogle, H. J. and Johnson, G. I. (2002)Mango stem-end rot (Botryosphaeria dothidea) disease control by partial-pressure infiltration of fungicidesAustralian Journal of Experimental Agriculture42 5: 625-629. doi:10.1071/EA99123
  26. Manuel PlanRosengren, K. JohanSando, LillianDaly, Norelle L. and Craik, David J. (2010).Structural and biochemical characteristics of the cyclotide kalata B5 from Oldenlandia affinis. In: Proceedings of the 1st International Conference on Circular Proteins. 1st International Conference on Circular Proteins, Heron Island, Qld, Australia, (647-658). 18-21 October 2009. doi:10.1002/bip.21409
  27. Plan, MRGoransson, URosengren, KJClark, RJDaly, NLEvert, PChen, CCagauan, AG and Craik, DJ (2004).Cyclotides: Novel Peptidic Pesticides for Plant Protection. In: Journal of Peptide Science. , , (278-278). .